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проблемы с установкой numpy с помощью homebrew python на macOS BigSur

#python #macos #numpy #homebrew #macos-big-sur

#python #macos #numpy #доморощенный #macos-биг-сур

Вопрос:

У меня есть macOS BigSur -> установлен CommandLineTools 12.3 beta -> установлен homebrew -> установлен python 3.8 с. brew install python@3.8 Python работает хорошо и появляется, когда я использую python3 команду. Однако, когда я пытаюсь установить NumPy с pip3 install numpy помощью, я получаю следующую ошибку ниже. Я был бы очень признателен вам за помощь

 Collecting numpy
  Using cached numpy-1.19.4.zip (7.3 MB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
    Preparing wheel metadata ... error
    ERROR: Command errored out with exit status 1:
     command: /usr/local/opt/python@3.8/bin/python3.8 /usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/tmp7cqupall
         cwd: /private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-install-0ccafnfa/numpy
    Complete output (227 lines):
    Processing numpy/random/_bounded_integers.pxd.in
    Processing numpy/random/_philox.pyx
    Processing numpy/random/_bounded_integers.pyx.in
    Processing numpy/random/_sfc64.pyx
    Processing numpy/random/_mt19937.pyx
    Processing numpy/random/bit_generator.pyx
    Processing numpy/random/mtrand.pyx
    Processing numpy/random/_generator.pyx
    Processing numpy/random/_pcg64.pyx
    Processing numpy/random/_common.pyx
    Cythonizing sources
    blas_opt_info:
    blas_mkl_info:
    customize UnixCCompiler
      libraries mkl_rt not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    blis_info:
      libraries blis not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    openblas_info:
      libraries openblas not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    atlas_3_10_blas_threads_info:
    Setting PTATLAS=ATLAS
      libraries tatlas not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    atlas_3_10_blas_info:
      libraries satlas not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    atlas_blas_threads_info:
    Setting PTATLAS=ATLAS
      libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    atlas_blas_info:
      libraries f77blas,cblas,atlas not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    accelerate_info:
      libraries accelerate not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
    Library accelerate was not found. Ignoring
      libraries veclib not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
    Library veclib was not found. Ignoring
      FOUND:
        extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
        extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
        define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
    
      FOUND:
        extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
        extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
        define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
    
    non-existing path in 'numpy/distutils': 'site.cfg'
    lapack_opt_info:
    lapack_mkl_info:
      libraries mkl_rt not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    openblas_lapack_info:
      libraries openblas not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    openblas_clapack_info:
      libraries openblas,lapack not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    flame_info:
      libraries flame not found in ['/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib', '/usr/local/lib', '/usr/lib']
      NOT AVAILABLE
    
    atlas_3_10_threads_info:
    Setting PTATLAS=ATLAS
      libraries lapack_atlas not found in /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib
      libraries tatlas,tatlas not found in /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib
      libraries lapack_atlas not found in /usr/local/lib
      libraries tatlas,tatlas not found in /usr/local/lib
      libraries lapack_atlas not found in /usr/lib
      libraries tatlas,tatlas not found in /usr/lib
    <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
      NOT AVAILABLE
    
    atlas_3_10_info:
      libraries lapack_atlas not found in /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib
      libraries satlas,satlas not found in /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib
      libraries lapack_atlas not found in /usr/local/lib
      libraries satlas,satlas not found in /usr/local/lib
      libraries lapack_atlas not found in /usr/lib
      libraries satlas,satlas not found in /usr/lib
    <class 'numpy.distutils.system_info.atlas_3_10_info'>
      NOT AVAILABLE
    
    atlas_threads_info:
    Setting PTATLAS=ATLAS
      libraries lapack_atlas not found in /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib
      libraries ptf77blas,ptcblas,atlas not found in /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib
      libraries lapack_atlas not found in /usr/local/lib
      libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
      libraries lapack_atlas not found in /usr/lib
      libraries ptf77blas,ptcblas,atlas not found in /usr/lib
    <class 'numpy.distutils.system_info.atlas_threads_info'>
      NOT AVAILABLE
    
    atlas_info:
      libraries lapack_atlas not found in /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib
      libraries f77blas,cblas,atlas not found in /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib
      libraries lapack_atlas not found in /usr/local/lib
      libraries f77blas,cblas,atlas not found in /usr/local/lib
      libraries lapack_atlas not found in /usr/lib
      libraries f77blas,cblas,atlas not found in /usr/lib
    <class 'numpy.distutils.system_info.atlas_info'>
      NOT AVAILABLE
    
      FOUND:
        extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
        extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
        define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
    
    running dist_info
    running build_src
    build_src
    building py_modules sources
    creating build
    creating build/src.macosx-11.0-x86_64-3.8
    creating build/src.macosx-11.0-x86_64-3.8/numpy
    creating build/src.macosx-11.0-x86_64-3.8/numpy/distutils
    building library "npymath" sources
    Could not locate executable gfortran
    Could not locate executable f95
    Could not locate executable f90
    Could not locate executable f77
    Could not locate executable xlf90
    Could not locate executable xlf
    Could not locate executable ifort
    Could not locate executable ifc
    Could not locate executable g77
    Could not locate executable g95
    Could not locate executable pgfortran
    don't know how to compile Fortran code on platform 'posix'
    creating build/src.macosx-11.0-x86_64-3.8/numpy/core
    creating build/src.macosx-11.0-x86_64-3.8/numpy/core/src
    creating build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npymath
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npymath/npy_math_internal.h
      adding 'build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npymath' to include_dirs.
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npymath/ieee754.c
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npymath/npy_math_complex.c
    None - nothing done with h_files = ['build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npymath/npy_math_internal.h']
    building library "npysort" sources
    creating build/src.macosx-11.0-x86_64-3.8/numpy/core/src/common
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/common/npy_sort.h
      adding 'build/src.macosx-11.0-x86_64-3.8/numpy/core/src/common' to include_dirs.
    creating build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npysort
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npysort/quicksort.c
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npysort/mergesort.c
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npysort/timsort.c
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npysort/heapsort.c
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npysort/radixsort.c
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/common/npy_partition.h
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npysort/selection.c
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/common/npy_binsearch.h
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/npysort/binsearch.c
    None - nothing done with h_files = ['build/src.macosx-11.0-x86_64-3.8/numpy/core/src/common/npy_sort.h', 'build/src.macosx-11.0-x86_64-3.8/numpy/core/src/common/npy_partition.h', 'build/src.macosx-11.0-x86_64-3.8/numpy/core/src/common/npy_binsearch.h']
    building library "npyrandom" sources
    building extension "numpy.core._multiarray_tests" sources
    creating build/src.macosx-11.0-x86_64-3.8/numpy/core/src/multiarray
    conv_template:> build/src.macosx-11.0-x86_64-3.8/numpy/core/src/multiarray/_multiarray_tests.c
    building extension "numpy.core._multiarray_umath" sources
    Running from numpy source directory.
    setup.py:480: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
      run_build = parse_setuppy_commands()
    /usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros'
      warnings.warn(msg)
    Traceback (most recent call last):
      File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 280, in <module>
        main()
      File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 263, in main
        json_out['return_val'] = hook(**hook_input['kwargs'])
      File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 133, in prepare_metadata_for_build_wheel
        return hook(metadata_directory, config_settings)
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-build-env-e1y5szqo/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 157, in prepare_metadata_for_build_wheel
        self.run_setup()
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-build-env-e1y5szqo/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 248, in run_setup
        super(_BuildMetaLegacyBackend,
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-build-env-e1y5szqo/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 142, in run_setup
        exec(compile(code, __file__, 'exec'), locals())
      File "setup.py", line 508, in <module>
        setup_package()
      File "setup.py", line 500, in setup_package
        setup(**metadata)
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-install-0ccafnfa/numpy/numpy/distutils/core.py", line 169, in setup
        return old_setup(**new_attr)
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-build-env-e1y5szqo/overlay/lib/python3.8/site-packages/setuptools/__init__.py", line 165, in setup
        return distutils.core.setup(**attrs)
      File "/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib/python3.8/distutils/core.py", line 148, in setup
        dist.run_commands()
      File "/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib/python3.8/distutils/dist.py", line 966, in run_commands
        self.run_command(cmd)
      File "/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib/python3.8/distutils/dist.py", line 985, in run_command
        cmd_obj.run()
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-build-env-e1y5szqo/overlay/lib/python3.8/site-packages/setuptools/command/dist_info.py", line 31, in run
        egg_info.run()
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-install-0ccafnfa/numpy/numpy/distutils/command/egg_info.py", line 24, in run
        self.run_command("build_src")
      File "/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib/python3.8/distutils/cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "/usr/local/Cellar/python@3.8/3.8.6_1/Frameworks/Python.framework/Versions/3.8/lib/python3.8/distutils/dist.py", line 985, in run_command
        cmd_obj.run()
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-install-0ccafnfa/numpy/numpy/distutils/command/build_src.py", line 144, in run
        self.build_sources()
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-install-0ccafnfa/numpy/numpy/distutils/command/build_src.py", line 161, in build_sources
        self.build_extension_sources(ext)
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-install-0ccafnfa/numpy/numpy/distutils/command/build_src.py", line 318, in build_extension_sources
        sources = self.generate_sources(sources, ext)
      File "/private/var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/pip-install-0ccafnfa/numpy/numpy/distutils/command/build_src.py", line 378, in generate_sources
        source = func(extension, build_dir)
      File "numpy/core/setup.py", line 436, in generate_config_h
        moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
      File "numpy/core/setup.py", line 47, in check_types
        out = check_types(*a, **kw)
      File "numpy/core/setup.py", line 292, in check_types
        raise SystemError(
    SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
    ----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/opt/python@3.8/bin/python3.8 /usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /var/folders/pt/_zy2t2xj0mvbh41_pm942s8m0000gn/T/tmp7cqupall Check the logs for full command output.

Ответ №1:

Несколько numpy дней назад разработчикам было сообщено о проблеме, и возникла проблема. Может быть, вы хотите подписаться на эту тему;

ОШИБКА: ошибка при установке NumPy через Pip на macOS Big Sur с помощью python от HomeBrew #17784

Это все еще немного запутанно, но несколько хороших людей работают над решениями; Это не идеально, но если вы можете, может быть, вы немного подождете?

Комментарии:

1. Ошибка, которую я показываю здесь, не совпадает с ошибкой, упомянутой в предоставленной вами ссылке. Я также получаю аналогичную ошибку при попытке установить jupyter

2. Добро пожаловать, очевидно, что есть проблемы, над которыми ведется работа — вам, вероятно, следует добавить свой в список по адресу numpy , и / или hombrew

Ответ №2:

Я смог решить аналогичную проблему на совершенно новом Macbook Air (чип M1), используя уровень совместимости Rosetta:

  1. Перейдите в раздел Приложения / утилиты и дублируйте, а затем переименуйте Terminal в Terminal x86
  2. Щелкните правой кнопкой мыши Terminal x86 , выберите «Получить информацию» и проверьте Open using Rosetta

Теперь вы должны иметь возможность использовать homebrew / pip / etc без проблем

Ответ №3:

Откройте свой терминал с помощью Rosetta и выполните установку, ни одна из этих проблем не возникнет.

Для Iterm вы можете выполнить поиск iterm в Finder -> Щелкнуть правой кнопкой мыши -> Получить информацию -> Выбрать опцию «Открыть с помощью Rosetta»

Для терминала Pycharm вы можете открыть Настройки -> Инструменты -> Терминал -> Обновить путь скрипта до «env / usr / bin / arch -x86_64 / bin / zsh —login»

Если вы используете терминал, кроме этого, вы можете просто погуглить и выяснить, как запустить этот терминал с помощью Rosetta.

Ответ №4:

Перейдите к Applications/Utilities дублированию, а затем переименуйте терминал в Terminal x86 Щелчок правой кнопкой мыши Terminal x86 , нажмите «Получить информацию» и установите флажок «Открыть с помощью Rosetta».

Метки: